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Biotechnology
PCR & DNA Technology

Genetic engineering, fermentation, cell biology

22 Q 3 Topics Take Mock Test
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What is the primary role of dNTPs (deoxynucleotide triphosphates) in the PCR reaction mixture?
A To serve as substrates for DNA polymerase extension
B To activate Taq polymerase
C To maintain pH of the buffer
D To provide energy for primer denaturation
Correct Answer:  A. To serve as substrates for DNA polymerase extension
EXPLANATION

dNTPs (dATP, dGTP, dCTP, dTTP) are incorporated into the growing DNA strand by Taq polymerase via phosphodiester bond formation.

Test
What is the theoretical maximum amplification of a DNA segment after 30 PCR cycles?
A 2^15 fold
B 2^30 fold
C 30 fold
D 2^60 fold
Correct Answer:  B. 2^30 fold
EXPLANATION

Each PCR cycle doubles the DNA amount (exponential amplification). After 30 cycles, theoretical amplification = 2^30 ≈ 10^9 fold increase.

Test
In a standard PCR cycle, at what temperature is the DNA double helix typically denatured?
A 50-55°C
B 72°C
C 94-95°C
D 65°C
Correct Answer:  C. 94-95°C
EXPLANATION

Denaturation occurs at 94-95°C where hydrogen bonds between complementary DNA strands break, separating double-stranded DNA into single strands.

Test
Which enzyme is primarily responsible for extending DNA strands during the elongation phase of PCR?
A Taq polymerase
B DNA ligase
C Restriction endonuclease
D Helicase
Correct Answer:  A. Taq polymerase
EXPLANATION

Taq polymerase, derived from Thermus aquaticus, is a heat-stable DNA polymerase that extends primers during PCR elongation at 72°C.

Test
What is the primary function of dNTPs in PCR?
A Act as primers for amplification
B Serve as building blocks for DNA synthesis
C Denature the template DNA
D Increase the buffer capacity
Correct Answer:  B. Serve as building blocks for DNA synthesis
EXPLANATION

dNTPs (deoxynucleotide triphosphates) are the precursor molecules that DNA polymerase incorporates into the growing DNA strand during the extension phase of PCR.

Test
In a typical PCR cycle, DNA denaturation occurs at approximately which temperature?
A 72°C
B 94-95°C
C 55°C
D 37°C
Correct Answer:  B. 94-95°C
EXPLANATION

DNA denaturation in PCR occurs at 94-95°C (or sometimes 98°C), where hydrogen bonds between DNA strands are broken, separating the double helix into single strands.

Test
Which thermostable DNA polymerase is most commonly used in standard PCR?
A Taq polymerase
B DNA polymerase I
C Reverse transcriptase
D T4 DNA ligase
Correct Answer:  A. Taq polymerase
EXPLANATION

Taq polymerase, isolated from Thermus aquaticus, is the most widely used enzyme in PCR due to its heat stability and ability to synthesize DNA at high temperatures.

Test
What is the optimal annealing temperature range for most PCR reactions?
A 45-65°C
B 25-35°C
C 75-85°C
D 90-100°C
Correct Answer:  A. 45-65°C
EXPLANATION

The annealing temperature typically ranges from 45-65°C and depends on the Tm (melting temperature) of the primers used. This temperature allows primers to bind specifically to target DNA.

Test
What is the primary principle behind whole exome sequencing (WES) in identifying disease-causing mutations?
A Sequencing only protein-coding regions (~1-2% of genome) to reduce costs while capturing most disease variants
B Sequencing entire genome including introns and intergenic regions
C Sequencing only mitochondrial DNA
D Sequencing only highly repetitive regions
Correct Answer:  A. Sequencing only protein-coding regions (~1-2% of genome) to reduce costs while capturing most disease variants
EXPLANATION

WES captures and sequences exonic regions (~50 Mb) using targeted enrichment, reducing sequencing depth and cost while identifying 85-90% of disease-causing variants.

Test
In real-time PCR (qPCR), which fluorescent dye binds directly to double-stranded DNA and is most commonly used in 2024-25 diagnostics?
A SYBR Green
B TaqMan probes
C Molecular beacons
D Black hole quenchers
Correct Answer:  A. SYBR Green
EXPLANATION

SYBR Green intercalates into double-stranded DNA and fluoresces. It is cost-effective and widely used in qPCR for gene expression studies and viral load detection.

Test
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