Govt. Exams
Entrance Exams
SYBR Green intercalates into double-stranded DNA and exhibits enhanced fluorescence, making it ideal for real-time monitoring of PCR amplification.
High self-complementarity and primer-dimer formation should be avoided as they reduce PCR efficiency and specificity. Primers should have minimal secondary structure.
Phi29 polymerase, from bacteriophage Phi29, has high processivity and 3' to 5' exonuclease activity, making it ideal for isothermal multiple displacement amplification of entire genomes.
Nested PCR uses outer primers for the first amplification round and inner primers for the second round, significantly improving specificity and sensitivity for detecting low-copy pathogens.
AS-PCR uses primers with mismatches at the 3' end that only allow amplification when perfectly matched to the target allele, providing rapid and cost-effective mutation detection.
GC-rich sequences tend to form stable secondary structures (hairpins, loops), which can inhibit primer annealing and polymerase extension, reducing PCR efficiency.
STRs (Short Tandem Repeats) exhibit high variability between individuals due to differences in repeat numbers, making them ideal for forensic DNA profiling and paternity testing.
AFLP combines restriction enzyme digestion with PCR amplification of specific DNA fragments, generating polymorphic banding patterns useful for genetic mapping and strain differentiation.
dPCR partitions the PCR reaction into numerous isolated compartments, allowing absolute quantification without requiring a standard curve, and provides higher precision than qPCR.
Reverse transcriptase synthesizes complementary DNA (cDNA) from an RNA template in the first step of RT-PCR, enabling amplification of RNA targets like mRNA.